https://renscq.r-universe.devRecent package updates in renscqR-universehttps://github.com/renscq.pnghttps://renscq.r-universe.devTue, 01 Sep 2026 09:05:02 GMTrensc0718@163.com (Shuchao Ren)Provides tools to read, validate, query, transform, write, and visualize gene annotations, genomic signal tracks, and variant tracks using a shared genomic coordinate framework. Supports GenePred, GTF, GFF3, and BED annotations; bedGraph, wig, and bigWig signals; VCF variants; integrated locus visualization; haplotype construction; phenotype association; linkage disequilibrium; haplotype refinement; and variant-effect analysis. The package interoperates with GenomicRanges objects and uses a pure-R signal I/O layer so core workflows do not require a compiled extension.https://github.com/r-universe/biocstaging/actions/runs/36864789770Tue, 01 Sep 2026 09:05:02 GMTGeneTrackR0.99.2successhttps://biocstaging.r-universe.devhttps://github.com/BiocStaging/GeneTrackRgetting-started.Rmdgetting-started.htmlGetting started with GeneTrackR2026-08-29 07:36:582026-09-01 07:51:36example-data.Rmdexample-data.htmlGeneTrackR deterministic example data2026-08-29 07:36:582026-09-01 07:51:36core-workflows.Rmdcore-workflows.htmlCore GeneTrackR workflow2026-08-27 19:07:292026-09-01 07:51:36annotation.Rmdannotation.htmlAnnotation I/O and conversion2026-08-29 07:36:582026-09-01 07:51:36gene-model.Rmdgene-model.htmlGene model visualization2026-08-29 07:36:582026-09-01 07:51:36signal-tracks.Rmdsignal-tracks.htmlGenomic signal tracks2026-08-27 19:07:292026-09-01 07:51:36variant-tracks.Rmdvariant-tracks.htmlVariant tracks2026-08-29 07:41:492026-09-01 07:51:36browser-tracks.Rmdbrowser-tracks.htmlIntegrated browser tracks2026-08-29 07:41:492026-09-01 07:51:36haplotype.Rmdhaplotype.htmlHaplotype analysis2026-08-29 08:25:172026-09-01 07:51:36phenotype.Rmdphenotype.htmlPhenotype association2026-08-29 08:25:172026-09-01 07:51:36linkage-disequilibrium.Rmdlinkage-disequilibrium.htmlLinkage disequilibrium analysis2026-08-29 08:55:212026-09-01 07:51:36haplotype-refinement.Rmdhaplotype-refinement.htmlPhenotype-guided haplotype refinement2026-08-29 08:55:212026-09-01 07:51:36variant-effect.Rmdvariant-effect.htmlVariant effect analysis2026-08-29 08:55:212026-09-01 07:51:36complete-workflow.Rmdcomplete-workflow.htmlComplete candidate-locus workflow2026-08-29 08:56:532026-09-01 07:51:36export-results.Rmdexport-results.htmlExport and reproducibility2026-08-29 08:56:532026-09-01 07:51:36